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CellSeekr Discovery ↗

Pairwise scRNA-seq Analysis
Matosevic Lab

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Filtered cells per patient

Percent Plot for Selected Pairwise Groups

If second phenotype is enabled, plot shows A (Pool1-Phen1), B (Pool1-Phen2), C (Pool2-Phen1), D (Pool2-Phen2). Brackets show A vs B and C vs D.

Average Gene Expression Results

Gene Expression Violin Plot

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CellSeekr Discovery ↗

Pairwise scRNA-seq Analysis
Matosevic Lab

Selected Comparison:

Upload files for Custom Group 1:

Upload files for Custom Group 2:

Selected Phenotype 1:

Start from predefined gate (Phenotype 1, optional):

Define genes for filter (Phenotype 1 - all conditions ANDed):

Define OR-groups (Phenotype 1 - any gene positive satisfies group):

Selected Phenotype 2:

Start from predefined gate (Phenotype 2, optional):

Define genes for filter (Phenotype 2 - all conditions ANDed):

Define OR-groups (Phenotype 2 - any gene positive satisfies group):

Denominator for percentage calculation:

Add additional gene requirements to denominator (optional):

Denominator for Phenotype 2 (correlation only):

Add additional gene requirements to Phen2 denominator (optional):

Filtered cells per patient

Percent Plot for Selected Pairwise Groups

Average Gene Expression Results

Gene Expression Violin Plot

CellSeekr Discovery ↗ Pairwise scRNA-seq Analysis Matosevic Lab

Selected Comparison:

Upload files for Custom Group 1:

Upload files for Custom Group 2:

Selected Phenotype 1:

Start from predefined gate (Phenotype 1, optional):

Define genes for filter (Phenotype 1 - all conditions ANDed):

Define OR-groups (Phenotype 1 - any gene positive satisfies group):

Selected Phenotype 2:

Start from predefined gate (Phenotype 2, optional):

Define genes for filter (Phenotype 2 - all conditions ANDed):

Define OR-groups (Phenotype 2 - any gene positive satisfies group):

Denominator for percentage calculation:

Add additional gene requirements to denominator (optional):

Denominator for Phenotype 2 (correlation only):

Add additional gene requirements to Phen2 denominator (optional):

Filtered cells per patient

Percent Plot for Selected Pairwise Groups

Average Gene Expression Results

Gene Expression Violin Plot

CellSeekr Discovery ↗

Pairwise scRNA-seq Analysis
Matosevic Lab